Online tools and resources

# Tools Links to Important Websites Utility
1

BLAST BLAST

DBT-INDIA DBT-INDIA

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches.
2

Clustal W2 Clustal W2

DST DST

A general purpose multiple sequence alignment program for DNA or proteins. It attempts to calculate the best match for the selected sequences.
3

ClustalOmega ClustaLOmega

CSIR CSIR

A general purpose multiple sequence alignment program for proteins.
4

H H Pred H H Pred

NCBI NCBI

Sensitive protein homology detection and structure prediction.HHsearch is an open-source software program for protein sequence searching that is part of the free HH-suite software package.
5

Phylip Phylip

DDBJ DDBJ

A free computational phylogenetics package of programs for inferring evolutionary trees (phylogenies).
6

Orifinder Orifinder

EMBL EMBL

an online system for finding oriCs in bacterial genomes based on an integrated method comprising the analysis of base composition asymmetry using the Z-curve method, distribution of DnaA boxes, and the occurrence of genes frequently close to oriCs.
7

GO GO

ExPasy ExPasy

The framework for the model of biology. The GO defines concepts/classes used to describe gene function.
8

KEGGPathway KEGGPathway

EMBOSS EMBOSS

A collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks.
9

FASTA FASTA

PubMed PubMed

A DNA and protein sequence alignment software package.This tool provides sequence similarity searching against protein databases using the FASTA suite of programs.
10

SWISS-PROT SWISS-PROT

UniProt UniProt

SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation.